Detailed information NTG0702939

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI375_RS12645
• Genome accession: NZ_CP099956
• Coordinates: 2772825..2773811 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain Isc15A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2767825..2778811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI375_RS12630 (NI375_12830)	recA	2768370..2769413 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
NI375_RS12635 (NI375_12835)	pncC	2769614..2770096 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
NI375_RS12640 (NI375_12840)	mutS	2770181..2772742 (+)	2562	WP_033907432.1	DNA mismatch repair protein MutS	-
NI375_RS12645 (NI375_12845)	rpoS	2772825..2773811 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
NI375_RS12650 (NI375_12850)	-	2773892..2774815 (-)	924	WP_308386871.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI375_RS12655 (NI375_12855)	-	2774829..2775455 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI375_RS12660 (NI375_12860)	surE	2775455..2776231 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
NI375_RS12665 (NI375_12865)	truD	2776231..2777274 (-)	1044	WP_308386872.1	tRNA pseudouridine(13) synthase TruD	-
NI375_RS12670 (NI375_12870)	ispF	2777320..2777796 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI375_RS12675 (NI375_12875)	ispD	2777813..2778520 (-)	708	WP_005380898.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI375_RS12680 (NI375_12880)	ftsB	2778522..2778803 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=702939 NI375_RS12645 WP_005380887.1 2772825..2773811(-) (rpoS) [Vibrio alginolyticus strain Isc15A]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=702939 NI375_RS12645 WP_005380887.1 2772825..2773811(-) (rpoS) [Vibrio alginolyticus strain Isc15A]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854