Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NI375_RS07285 Genome accession   NZ_CP099956
Coordinates   1611987..1613513 (-) Length   508 a.a.
NCBI ID   WP_054576899.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc15A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606987..1618513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI375_RS07265 (NI375_07265) - 1607006..1608436 (-) 1431 WP_308387221.1 lipopolysaccharide biosynthesis protein -
  NI375_RS07270 (NI375_07270) - 1608429..1609601 (-) 1173 WP_222716682.1 glycosyltransferase -
  NI375_RS07275 (NI375_07275) - 1609613..1610797 (-) 1185 WP_053303085.1 glycosyltransferase -
  NI375_RS07280 (NI375_07280) - 1610942..1612012 (-) 1071 WP_308387222.1 glycosyltransferase family 4 protein -
  NI375_RS07285 (NI375_07285) luxO 1611987..1613513 (-) 1527 WP_054576899.1 sigma-54 dependent transcriptional regulator Regulator
  NI375_RS07290 (NI375_07290) - 1613822..1614202 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  NI375_RS07295 (NI375_07295) - 1614214..1614900 (-) 687 WP_054576898.1 AAA family ATPase -
  NI375_RS07300 (NI375_07300) - 1614900..1617002 (-) 2103 WP_213893836.1 SLBB domain-containing protein -
  NI375_RS07305 (NI375_07305) - 1616999..1617865 (-) 867 WP_308387223.1 OmpA family protein -
  NI375_RS07310 (NI375_07310) - 1617892..1618212 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56538.48 Da        Isoelectric Point: 5.9083

>NTDB_id=702928 NI375_RS07285 WP_054576899.1 1611987..1613513(-) (luxO) [Vibrio alginolyticus strain Isc15A]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKATTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=702928 NI375_RS07285 WP_054576899.1 1611987..1613513(-) (luxO) [Vibrio alginolyticus strain Isc15A]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGTCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAGCAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484