Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NI375_RS01260 Genome accession   NZ_CP099956
Coordinates   267113..268120 (-) Length   335 a.a.
NCBI ID   WP_158157177.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc15A     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 262113..273120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI375_RS01235 (NI375_01240) rraA 262197..262703 (-) 507 WP_005379537.1 ribonuclease E activity regulator RraA -
  NI375_RS01240 (NI375_01245) - 262780..263697 (-) 918 WP_005383178.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NI375_RS01245 (NI375_01250) hslU 264318..265649 (-) 1332 WP_308386990.1 HslU--HslV peptidase ATPase subunit -
  NI375_RS01250 (NI375_01255) hslV 265673..266224 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  NI375_RS01255 (NI375_01260) ftsN 266340..266887 (-) 548 Protein_240 cell division protein FtsN -
  NI375_RS01260 (NI375_01265) cytR 267113..268120 (-) 1008 WP_158157177.1 DNA-binding transcriptional regulator CytR Regulator
  NI375_RS01265 (NI375_01270) priA 268445..270649 (-) 2205 WP_308386991.1 primosomal protein N' -
  NI375_RS01270 (NI375_01275) rpmE 270946..271167 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  NI375_RS01275 (NI375_01280) rpsJ 271623..271934 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  NI375_RS01280 (NI375_01285) rplC 271949..272578 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36879.42 Da        Isoelectric Point: 6.2447

>NTDB_id=702917 NI375_RS01260 WP_158157177.1 267113..268120(-) (cytR) [Vibrio alginolyticus strain Isc15A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGITKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=702917 NI375_RS01260 WP_158157177.1 267113..268120(-) (cytR) [Vibrio alginolyticus strain Isc15A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCAGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCACTAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.82

99.701

0.896