Detailed information NTG0702877

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI383_RS09330
• Genome accession: NZ_CP099955
• Coordinates: 266050..267057 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain Isc4A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 261050..272057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI383_RS09300 (NI383_09250)	zapB	261219..261461 (+)	243	WP_005481417.1	cell division protein ZapB	-
NI383_RS09305 (NI383_09255)	rraA	261566..262078 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
NI383_RS09310 (NI383_09260)	-	262155..263072 (-)	918	WP_017449001.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NI383_RS09315 (NI383_09265)	hslU	263257..264588 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
NI383_RS09320 (NI383_09270)	hslV	264612..265163 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
NI383_RS09325 (NI383_09275)	ftsN	265328..265873 (-)	546	WP_005489623.1	cell division protein FtsN	-
NI383_RS09330 (NI383_09280)	cytR	266050..267057 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
NI383_RS09335 (NI383_09285)	priA	267390..269594 (-)	2205	WP_023624900.1	primosomal protein N'	-
NI383_RS09340 (NI383_09290)	rpmE	269889..270110 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
NI383_RS09345 (NI383_09295)	rpsJ	270568..270879 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
NI383_RS09350 (NI383_09300)	rplC	270894..271523 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=702877 NI383_RS09330 WP_005481416.1 266050..267057(-) (cytR) [Vibrio parahaemolyticus strain Isc4A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=702877 NI383_RS09330 WP_005481416.1 266050..267057(-) (cytR) [Vibrio parahaemolyticus strain Isc4A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904