Detailed information NTG0702874

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP07_RS03060
• Genome accession: NZ_CP115298
• Coordinates: 663138..664142 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 37
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 658138..669142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP07_RS03030 (PCP07_03030)	fghA	658230..659081 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
PCP07_RS03035 (PCP07_03035)	ispF	659152..659625 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP07_RS03040 (PCP07_03040)	truD	659622..660689 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
PCP07_RS03045 (PCP07_03045)	surE	660677..661426 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP07_RS03050 (PCP07_03050)	-	661459..662094 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP07_RS03055 (PCP07_03055)	-	662140..663033 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP07_RS03060 (PCP07_03060)	rpoS	663138..664142 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP07_RS03065 (PCP07_03065)	fdxA	664569..664892 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP07_RS03070 (PCP07_03070)	mutS	664959..667526 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP07_RS03075 (PCP07_03075)	-	667652..668659 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=702874 PCP07_RS03060 WP_003113871.1 663138..664142(+) (rpoS) [Pseudomonas aeruginosa strain 37]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=702874 PCP07_RS03060 WP_003113871.1 663138..664142(+) (rpoS) [Pseudomonas aeruginosa strain 37]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653