Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP76_RS28575 Genome accession   NZ_CP115297
Coordinates   6083938..6084462 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6078938..6089462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS28555 (PCP76_28535) - 6079005..6081476 (-) 2472 WP_039026606.1 penicillin-binding protein 1A -
  PCP76_RS28560 (PCP76_28540) pilM 6081661..6082725 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP76_RS28565 (PCP76_28545) pilN 6082725..6083321 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP76_RS28570 (PCP76_28550) pilO 6083318..6083941 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP76_RS28575 (PCP76_28555) comL/pilP 6083938..6084462 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP76_RS28580 (PCP76_28560) pilQ 6084516..6086660 (+) 2145 WP_033977030.1 type 4a pilus secretin PilQ Machinery gene
  PCP76_RS28585 (PCP76_28565) aroK 6086672..6087190 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP76_RS28590 (PCP76_28570) aroB 6087240..6088346 (+) 1107 WP_073648621.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=702867 PCP76_RS28575 WP_003095836.1 6083938..6084462(+) (comL/pilP) [Pseudomonas aeruginosa strain 135]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=702867 PCP76_RS28575 WP_003095836.1 6083938..6084462(+) (comL/pilP) [Pseudomonas aeruginosa strain 135]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCTT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACTCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362