Detailed information NTG0702849

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI391_RS12425
• Genome accession: NZ_CP099951
• Coordinates: 2733125..2734111 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain Isc25B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2728125..2739111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI391_RS12410 (NI391_12420)	recA	2728670..2729713 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
NI391_RS12415 (NI391_12425)	pncC	2729914..2730396 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
NI391_RS12420 (NI391_12430)	mutS	2730481..2733042 (+)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
NI391_RS12425 (NI391_12435)	rpoS	2733125..2734111 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
NI391_RS12430 (NI391_12440)	-	2734192..2735113 (-)	922	Protein_2416	peptidoglycan DD-metalloendopeptidase family protein	-
NI391_RS12435 (NI391_12445)	-	2735127..2735753 (-)	627	WP_315867605.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI391_RS12440 (NI391_12450)	surE	2735753..2736529 (-)	777	WP_005383788.1	5'/3'-nucleotidase SurE	-
NI391_RS12445 (NI391_12455)	truD	2736529..2737572 (-)	1044	WP_064354303.1	tRNA pseudouridine(13) synthase TruD	-
NI391_RS12450 (NI391_12460)	ispF	2737618..2738094 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI391_RS12455 (NI391_12465)	ispD	2738091..2738816 (-)	726	WP_064354304.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI391_RS12460 (NI391_12470)	ftsB	2738818..2739099 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=702849 NI391_RS12425 WP_005380887.1 2733125..2734111(-) (rpoS) [Vibrio alginolyticus strain Isc25B]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=702849 NI391_RS12425 WP_005380887.1 2733125..2734111(-) (rpoS) [Vibrio alginolyticus strain Isc25B]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854