Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP76_RS23640 Genome accession   NZ_CP115297
Coordinates   5027021..5027386 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 135     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5022021..5032386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS23625 (PCP76_23600) pilK 5023365..5024240 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  PCP76_RS23630 (PCP76_23605) pilJ 5024301..5026349 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP76_RS23635 (PCP76_23610) - 5026434..5026970 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP76_RS23640 (PCP76_23615) pilH 5027021..5027386 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP76_RS23645 (PCP76_23620) pilG 5027433..5027840 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP76_RS23650 (PCP76_23625) gshB 5028095..5029048 (+) 954 WP_073649039.1 glutathione synthase -
  PCP76_RS23655 (PCP76_23630) - 5029186..5030079 (+) 894 WP_003084580.1 TonB family protein -
  PCP76_RS23660 (PCP76_23635) - 5030128..5030697 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP76_RS23665 (PCP76_23640) ruvX 5030697..5031131 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP76_RS23670 (PCP76_23645) pyrR 5031243..5031755 (+) 513 WP_033972296.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=702838 PCP76_RS23640 WP_003084587.1 5027021..5027386(-) (pilH) [Pseudomonas aeruginosa strain 135]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=702838 PCP76_RS23640 WP_003084587.1 5027021..5027386(-) (pilH) [Pseudomonas aeruginosa strain 135]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364