Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI391_RS06555 Genome accession   NZ_CP099951
Coordinates   1419414..1420835 (-) Length   473 a.a.
NCBI ID   WP_017820876.1    Uniprot ID   A0A7Y0MUH5
Organism   Vibrio alginolyticus strain Isc25B     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414414..1425835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI391_RS06530 (NI391_06525) - 1414945..1415595 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  NI391_RS06535 (NI391_06530) purT 1415668..1416843 (-) 1176 WP_064353845.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NI391_RS06540 (NI391_06535) cdd 1416987..1417874 (-) 888 WP_064353846.1 cytidine deaminase -
  NI391_RS06545 (NI391_06540) - 1418305..1418982 (-) 678 WP_005377888.1 LrgB family protein -
  NI391_RS06550 (NI391_06545) - 1418984..1419358 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  NI391_RS06555 (NI391_06550) sbcB 1419414..1420835 (-) 1422 WP_017820876.1 exodeoxyribonuclease I Machinery gene
  NI391_RS06560 (NI391_06555) - 1420993..1422366 (-) 1374 WP_053350420.1 L-cystine transporter -
  NI391_RS06565 (NI391_06560) - 1422567..1423256 (-) 690 WP_053350419.1 NAD(P)H-binding protein -
  NI391_RS06570 (NI391_06565) cobT 1423505..1424548 (+) 1044 WP_021707632.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NI391_RS06575 (NI391_06570) - 1424578..1425352 (+) 775 Protein_1265 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54446.62 Da        Isoelectric Point: 4.8633

>NTDB_id=702838 NI391_RS06555 WP_017820876.1 1419414..1420835(-) (sbcB) [Vibrio alginolyticus strain Isc25B]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=702838 NI391_RS06555 WP_017820876.1 1419414..1420835(-) (sbcB) [Vibrio alginolyticus strain Isc25B]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0MUH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793