Detailed information NTG0702829

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI391_RS01460
• Genome accession: NZ_CP099951
• Coordinates: 308625..309632 (-)
• Length: 335 a.a.
• NCBI ID: WP_064376652.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain Isc25B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 303625..314632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI391_RS01430 (NI391_01430)	-	304141..304572 (-)	432	WP_140362774.1	DUF2787 family protein	-
NI391_RS01435 (NI391_01435)	radC	304569..305042 (-)	474	WP_046874059.1	DNA repair protein RadC	-
NI391_RS01440 (NI391_01440)	-	305446..305670 (+)	225	WP_064353571.1	hypothetical protein	-
NI391_RS01445 (NI391_01445)	hslU	305834..307165 (-)	1332	WP_140362775.1	HslU--HslV peptidase ATPase subunit	-
NI391_RS01450 (NI391_01450)	hslV	307189..307740 (-)	552	WP_005383176.1	ATP-dependent protease subunit HslV	-
NI391_RS01455 (NI391_01455)	ftsN	307854..308402 (-)	549	WP_025998522.1	cell division protein FtsN	-
NI391_RS01460 (NI391_01460)	cytR	308625..309632 (-)	1008	WP_064376652.1	DNA-binding transcriptional regulator CytR	Regulator
NI391_RS01465 (NI391_01465)	priA	309956..312160 (-)	2205	WP_140362776.1	primosomal protein N'	-
NI391_RS01470 (NI391_01470)	rpmE	312457..312678 (+)	222	WP_005379546.1	50S ribosomal protein L31	-
NI391_RS01475 (NI391_01475)	rpsJ	313135..313446 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
NI391_RS01480 (NI391_01480)	rplC	313461..314090 (+)	630	WP_005379555.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36837.34 Da
• Isoelectric Point: 5.9760

>NTDB_id=702829 NI391_RS01460 WP_064376652.1 308625..309632(-) (cytR) [Vibrio alginolyticus strain Isc25B]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKSIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide

• Length: 1008 bp

>NTDB_id=702829 NI391_RS01460 WP_064376652.1 308625..309632(-) (cytR) [Vibrio alginolyticus strain Isc25B]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
GGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGAAGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTTCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAATCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAAAGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAATTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAGCCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTCCCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACTATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.605	99.701	0.973
cytR	Vibrio cholerae C6706	89.521	99.701	0.893