Detailed information NTG0702825

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP76_RS18495
• Genome accession: NZ_CP115297
• Coordinates: 3938171..3939175 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 135
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3933171..3944175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP76_RS18480 (PCP76_18460)	-	3933645..3934652 (+)	1008	WP_033974397.1	TolB family protein	-
PCP76_RS18485 (PCP76_18465)	mutS	3934787..3937354 (+)	2568	WP_071546755.1	DNA mismatch repair protein MutS	-
PCP76_RS18490 (PCP76_18470)	fdxA	3937421..3937744 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP76_RS18495 (PCP76_18475)	rpoS	3938171..3939175 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP76_RS18500 (PCP76_18480)	-	3939280..3940173 (-)	894	WP_033974347.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP76_RS18505 (PCP76_18485)	-	3940219..3940854 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP76_RS18510 (PCP76_18490)	surE	3940887..3941636 (-)	750	WP_033975657.1	5'/3'-nucleotidase SurE	-
PCP76_RS18515 (PCP76_18495)	truD	3941624..3942691 (-)	1068	WP_073650245.1	tRNA pseudouridine(13) synthase TruD	-
PCP76_RS18520 (PCP76_18500)	ispF	3942688..3943161 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP76_RS18525 (PCP76_18505)	fghA	3943232..3944083 (-)	852	WP_070748660.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=702825 PCP76_RS18495 WP_003113871.1 3938171..3939175(-) (rpoS) [Pseudomonas aeruginosa strain 135]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=702825 PCP76_RS18495 WP_003113871.1 3938171..3939175(-) (rpoS) [Pseudomonas aeruginosa strain 135]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653