Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PCP76_RS16105 Genome accession   NZ_CP115297
Coordinates   3424174..3426186 (-) Length   670 a.a.
NCBI ID   WP_003104590.1    Uniprot ID   P72174
Organism   Pseudomonas aeruginosa strain 135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419174..3431186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS16090 (PCP76_16075) - 3420564..3421484 (-) 921 WP_033971541.1 LysR family transcriptional regulator -
  PCP76_RS16095 (PCP76_16080) - 3421587..3422621 (+) 1035 WP_033971542.1 HlyD family secretion protein -
  PCP76_RS16100 (PCP76_16085) - 3422671..3424170 (+) 1500 WP_003130539.1 MDR family MFS transporter -
  PCP76_RS16105 (PCP76_16090) uvrB 3424174..3426186 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP76_RS16110 (PCP76_16095) - 3426374..3427570 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP76_RS16120 (PCP76_16105) comEA/comE1 3427787..3428116 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PCP76_RS16125 (PCP76_16110) - 3428307..3430304 (-) 1998 WP_073649874.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76067.31 Da        Isoelectric Point: 5.0950

>NTDB_id=702819 PCP76_RS16105 WP_003104590.1 3424174..3426186(-) (uvrB) [Pseudomonas aeruginosa strain 135]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=702819 PCP76_RS16105 WP_003104590.1 3424174..3426186(-) (uvrB) [Pseudomonas aeruginosa strain 135]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGTTCTGGCAAGACTTTCAGCATCGCCAACGTAATTGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGATTCCTCGATCAACGACCATATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTTGCCACCGTGTCGTCCATCTACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GATCGCGGCGACCGCATCGACCAGCGCGAACTGCTGCGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAAGCGATCCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACCCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTTGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAATTACTCGCGCTATCTTTCCGGGCGCGCCCCCGGCGAGCCG
CCGCCGACGCTCTATGACTACCTGCCGGCCAATTCGCTGCTGGTTATCGACGAGTCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAACATGCCGGGCGGGTCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGTCCGGCGAT
GACCCAGGTGGACGACCTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTATCTCGGTGATCACGACGTTCGGGTACGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTCAACGAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGG
CGGAAGAGAGCGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTATCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTACGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(632-665)

UvrB interaction domain (UvrB_inter)

(158-248)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P72174

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae R6

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae D39

57.839

98.06

0.567