Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PCP76_RS15420 Genome accession   NZ_CP115297
Coordinates   3270488..3271102 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain 135     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3265488..3276102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS15400 (PCP76_15385) - 3266930..3267559 (+) 630 WP_073649246.1 CsiV family protein -
  PCP76_RS15405 (PCP76_15390) - 3267606..3268343 (-) 738 WP_073649247.1 S-methyl-5'-thioinosine phosphorylase -
  PCP76_RS15410 (PCP76_15395) nagZ 3268355..3269353 (-) 999 WP_073649248.1 beta-N-acetylhexosaminidase -
  PCP76_RS15415 (PCP76_15400) psrA 3269555..3270256 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  PCP76_RS15420 (PCP76_15405) dinR/lexA 3270488..3271102 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PCP76_RS15425 (PCP76_15410) sulA 3271114..3271596 (+) 483 WP_033968910.1 SOS-induced cell division inhibitor SulA -
  PCP76_RS15430 (PCP76_15415) - 3271617..3271850 (-) 234 WP_003109483.1 hypothetical protein -
  PCP76_RS15435 (PCP76_15420) - 3272056..3272574 (-) 519 WP_033968911.1 DUF6586 family protein -
  PCP76_RS15440 (PCP76_15425) topA 3272681..3275287 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  PCP76_RS15445 (PCP76_15430) - 3275378..3275641 (-) 264 WP_170868875.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=702815 PCP76_RS15420 WP_003091196.1 3270488..3271102(+) (dinR/lexA) [Pseudomonas aeruginosa strain 135]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=702815 PCP76_RS15420 WP_003091196.1 3270488..3271102(+) (dinR/lexA) [Pseudomonas aeruginosa strain 135]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTCGCGCGCAAGG
GTGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGTGTCGCAGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTAGTCGCGCGGATCGGCGAGGAGGTCACA
GTGAAACGTTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387