Detailed information NTG0702809

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI392_RS20840
• Genome accession: NZ_CP099950
• Coordinates: 2744329..2745315 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain Isc1B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2739329..2750315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI392_RS20825 (NI392_20980)	recA	2739874..2740917 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
NI392_RS20830 (NI392_20985)	pncC	2741118..2741600 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
NI392_RS20835 (NI392_20990)	mutS	2741685..2744246 (+)	2562	WP_104975585.1	DNA mismatch repair protein MutS	-
NI392_RS20840 (NI392_20995)	rpoS	2744329..2745315 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
NI392_RS20845 (NI392_21000)	-	2745396..2746317 (-)	922	Protein_2466	peptidoglycan DD-metalloendopeptidase family protein	-
NI392_RS20850 (NI392_21005)	-	2746331..2746957 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI392_RS20855 (NI392_21010)	surE	2746957..2747733 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
NI392_RS20860 (NI392_21015)	truD	2747733..2748776 (-)	1044	WP_104975586.1	tRNA pseudouridine(13) synthase TruD	-
NI392_RS20865 (NI392_21020)	ispF	2748822..2749298 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI392_RS20870 (NI392_21025)	ispD	2749313..2750020 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI392_RS20875 (NI392_21030)	ftsB	2750022..2750303 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=702809 NI392_RS20840 WP_005380887.1 2744329..2745315(-) (rpoS) [Vibrio alginolyticus strain Isc1B]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=702809 NI392_RS20840 WP_005380887.1 2744329..2745315(-) (rpoS) [Vibrio alginolyticus strain Isc1B]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854