Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NI392_RS20710 Genome accession   NZ_CP099950
Coordinates   2722164..2722682 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain Isc1B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717164..2727682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS20685 (NI392_20840) rimM 2717253..2717801 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  NI392_RS20690 (NI392_20845) rpsP 2717831..2718079 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI392_RS20695 (NI392_20850) ffh 2718289..2719671 (-) 1383 WP_005385423.1 signal recognition particle protein -
  NI392_RS20700 (NI392_20855) - 2719896..2720690 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  NI392_RS20705 (NI392_20860) - 2720815..2722095 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  NI392_RS20710 (NI392_20865) luxS 2722164..2722682 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  NI392_RS20715 (NI392_20870) - 2722767..2723372 (-) 606 WP_169644374.1 hypothetical protein -
  NI392_RS20720 (NI392_20875) gshA 2723396..2724964 (-) 1569 WP_054574812.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=702806 NI392_RS20710 WP_017820391.1 2722164..2722682(-) (luxS) [Vibrio alginolyticus strain Isc1B]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=702806 NI392_RS20710 WP_017820391.1 2722164..2722682(-) (luxS) [Vibrio alginolyticus strain Isc1B]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866