Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NI392_RS18685 Genome accession   NZ_CP099950
Coordinates   2276269..2277675 (-) Length   468 a.a.
NCBI ID   WP_169644366.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc1B     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271269..2282675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS18650 (NI392_18815) moaE 2271774..2272229 (-) 456 WP_005380781.1 molybdopterin synthase catalytic subunit MoaE -
  NI392_RS18655 (NI392_18820) moaD 2272231..2272488 (-) 258 WP_005380780.1 molybdopterin synthase sulfur carrier subunit -
  NI392_RS18660 (NI392_18825) moaC 2272485..2272964 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  NI392_RS18665 (NI392_18830) moaB 2272991..2273503 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  NI392_RS18670 (NI392_18835) moaA 2273605..2274594 (-) 990 WP_005380776.1 GTP 3',8-cyclase MoaA -
  NI392_RS18675 (NI392_18840) - 2274893..2275789 (+) 897 WP_005388931.1 YvcK family protein -
  NI392_RS18680 (NI392_18845) luxU 2275928..2276272 (-) 345 WP_104975499.1 quorum-sensing phosphorelay protein LuxU -
  NI392_RS18685 (NI392_18850) luxO 2276269..2277675 (-) 1407 WP_169644366.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NI392_RS18690 (NI392_18855) uvrB 2277967..2279997 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52151.75 Da        Isoelectric Point: 6.2547

>NTDB_id=702800 NI392_RS18685 WP_169644366.1 2276269..2277675(-) (luxO) [Vibrio alginolyticus strain Isc1B]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNNYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVTKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=702800 NI392_RS18685 WP_169644366.1 2276269..2277675(-) (luxO) [Vibrio alginolyticus strain Isc1B]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTACCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACCAAACTAAAAA
ATGAAGCCGATAATCCAGGTAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGTGCTGCGAATGATCGTCAAGGTGCTGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAACTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGACTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829