Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI392_RS14570 Genome accession   NZ_CP099950
Coordinates   1397528..1398949 (-) Length   473 a.a.
NCBI ID   WP_104975258.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc1B     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392528..1403949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS14545 (NI392_14535) - 1393059..1393709 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  NI392_RS14550 (NI392_14540) purT 1393782..1394957 (-) 1176 WP_025766819.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NI392_RS14555 (NI392_14545) cdd 1395101..1395988 (-) 888 WP_005377892.1 cytidine deaminase -
  NI392_RS14560 (NI392_14550) - 1396419..1397096 (-) 678 WP_005377888.1 LrgB family protein -
  NI392_RS14565 (NI392_14555) - 1397098..1397472 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  NI392_RS14570 (NI392_14560) sbcB 1397528..1398949 (-) 1422 WP_104975258.1 exodeoxyribonuclease I Machinery gene
  NI392_RS14575 (NI392_14565) - 1399107..1400480 (-) 1374 WP_005377885.1 L-cystine transporter -
  NI392_RS14580 (NI392_14570) - 1400681..1401370 (-) 690 WP_054577910.1 NAD(P)H-binding protein -
  NI392_RS14585 (NI392_14575) cobT 1401619..1402662 (+) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NI392_RS14590 (NI392_14580) - 1402662..1403444 (+) 783 WP_392392188.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54543.74 Da        Isoelectric Point: 4.8239

>NTDB_id=702797 NI392_RS14570 WP_104975258.1 1397528..1398949(-) (sbcB) [Vibrio alginolyticus strain Isc1B]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIEPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLAILRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=702797 NI392_RS14570 WP_104975258.1 1397528..1398949(-) (sbcB) [Vibrio alginolyticus strain Isc1B]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGAACCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCAATACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.858

100

0.789