Detailed information NTG0702787

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI392_RS09340
• Genome accession: NZ_CP099950
• Coordinates: 261817..262824 (-)
• Length: 335 a.a.
• NCBI ID: WP_064376652.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain Isc1B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 256817..267824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI392_RS09310 (NI392_09305)	-	257331..257762 (-)	432	WP_017633432.1	DUF2787 family protein	-
NI392_RS09315 (NI392_09310)	radC	257759..258232 (-)	474	WP_064353570.1	DNA repair protein RadC	-
NI392_RS09320 (NI392_09315)	-	258636..258860 (+)	225	WP_064353571.1	hypothetical protein	-
NI392_RS09325 (NI392_09320)	hslU	259024..260355 (-)	1332	WP_025768349.1	HslU--HslV peptidase ATPase subunit	-
NI392_RS09330 (NI392_09325)	hslV	260379..260930 (-)	552	WP_005383176.1	ATP-dependent protease subunit HslV	-
NI392_RS09335 (NI392_09330)	ftsN	261046..261594 (-)	549	WP_025998522.1	cell division protein FtsN	-
NI392_RS09340 (NI392_09335)	cytR	261817..262824 (-)	1008	WP_064376652.1	DNA-binding transcriptional regulator CytR	Regulator
NI392_RS09345 (NI392_09340)	priA	263148..265352 (-)	2205	WP_315874279.1	primosomal protein N'	-
NI392_RS09350 (NI392_09345)	rpmE	265649..265870 (+)	222	WP_005379546.1	50S ribosomal protein L31	-
NI392_RS09355 (NI392_09350)	tnpA	266045..266479 (+)	435	WP_017633711.1	IS200/IS605 family transposase	-
NI392_RS09360 (NI392_09355)	rpsJ	266940..267251 (+)	312	WP_004410492.1	30S ribosomal protein S10	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36837.34 Da
• Isoelectric Point: 5.9760

>NTDB_id=702787 NI392_RS09340 WP_064376652.1 261817..262824(-) (cytR) [Vibrio alginolyticus strain Isc1B]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKSIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide

• Length: 1008 bp

>NTDB_id=702787 NI392_RS09340 WP_064376652.1 261817..262824(-) (cytR) [Vibrio alginolyticus strain Isc1B]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
GGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGAAGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTTCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAATCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAAAGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAATTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAGCCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTCCCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACTATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.605	99.701	0.973
cytR	Vibrio cholerae C6706	89.521	99.701	0.893