Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NI380_RS19900 Genome accession   NZ_CP099935
Coordinates   935769..936866 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain BM26A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 930769..941866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS19885 (NI380_20205) - 931433..932488 (-) 1056 WP_203528054.1 HlyD family secretion protein -
  NI380_RS19890 (NI380_20210) - 932526..932981 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  NI380_RS19895 (NI380_20215) luxQ 933193..935769 (-) 2577 WP_308386437.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  NI380_RS19900 (NI380_20220) luxP 935769..936866 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  NI380_RS19905 (NI380_20225) - 937218..937538 (-) 321 WP_267327668.1 GIY-YIG nuclease family protein -
  NI380_RS19910 (NI380_20230) - 937535..938185 (-) 651 WP_017447360.1 YceH family protein -
  NI380_RS19915 (NI380_20235) - 938362..938577 (-) 216 WP_005477197.1 hypothetical protein -
  NI380_RS19920 (NI380_20240) - 938905..939219 (+) 315 WP_005453573.1 DUF496 family protein -
  NI380_RS19925 (NI380_20245) - 939342..940679 (+) 1338 WP_071652962.1 MATE family efflux transporter -
  NI380_RS19930 (NI380_20250) - 940753..941730 (-) 978 WP_140148795.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=702751 NI380_RS19900 WP_005463467.1 935769..936866(-) (luxP) [Vibrio parahaemolyticus strain BM26A]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=702751 NI380_RS19900 WP_005463467.1 935769..936866(-) (luxP) [Vibrio parahaemolyticus strain BM26A]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATCTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGTAAGCAGTTTCCGAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGACATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
CTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644