Detailed information NTG0702741

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI380_RS14385
• Genome accession: NZ_CP099934
• Coordinates: 3062617..3063663 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3057617..3068663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI380_RS14365 (NI380_14710)	rplC	3058191..3058820 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
NI380_RS14370 (NI380_14715)	rpsJ	3058835..3059146 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
NI380_RS14375 (NI380_14720)	rpmE	3059604..3059825 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
NI380_RS14380 (NI380_14725)	priA	3060120..3062323 (+)	2204	Protein_2720	primosomal protein N'	-
NI380_RS14385 (NI380_14730)	cytR	3062617..3063663 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
NI380_RS14390 (NI380_14735)	ftsN	3063840..3064385 (+)	546	WP_005481405.1	cell division protein FtsN	-
NI380_RS14395 (NI380_14740)	hslV	3064550..3065101 (+)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
NI380_RS14400 (NI380_14745)	hslU	3065125..3066456 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
NI380_RS14405 (NI380_14750)	-	3066640..3067557 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NI380_RS14410 (NI380_14755)	rraA	3067634..3068146 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
NI380_RS14415 (NI380_14760)	zapB	3068251..3068493 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=702741 NI380_RS14385 WP_254894148.1 3062617..3063663(+) (cytR) [Vibrio parahaemolyticus strain BM26A]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=702741 NI380_RS14385 WP_254894148.1 3062617..3063663(+) (cytR) [Vibrio parahaemolyticus strain BM26A]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871