Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI380_RS09435 Genome accession   NZ_CP099934
Coordinates   1981145..1982566 (+) Length   473 a.a.
NCBI ID   WP_308386167.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1976145..1987566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS09415 (NI380_09760) - 1976204..1976956 (-) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -
  NI380_RS09420 (NI380_09765) cobT 1977001..1978044 (-) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NI380_RS09425 (NI380_09770) - 1978728..1979423 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  NI380_RS09430 (NI380_09775) - 1979616..1980989 (+) 1374 WP_025575005.1 L-cystine transporter -
  NI380_RS09435 (NI380_09780) sbcB 1981145..1982566 (+) 1422 WP_308386167.1 exodeoxyribonuclease I Machinery gene
  NI380_RS09440 (NI380_09785) - 1982622..1982996 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  NI380_RS09445 (NI380_09790) - 1982998..1983675 (+) 678 WP_005454891.1 LrgB family protein -
  NI380_RS09450 (NI380_09795) cdd 1984040..1984927 (+) 888 WP_025505218.1 cytidine deaminase -
  NI380_RS09455 (NI380_09800) purT 1985075..1986250 (+) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NI380_RS09460 (NI380_09805) - 1986352..1987002 (-) 651 WP_308386168.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54601.88 Da        Isoelectric Point: 4.9230

>NTDB_id=702731 NI380_RS09435 WP_308386167.1 1981145..1982566(+) (sbcB) [Vibrio parahaemolyticus strain BM26A]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSNPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=702731 NI380_RS09435 WP_308386167.1 1981145..1982566(+) (sbcB) [Vibrio parahaemolyticus strain BM26A]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAACCCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799