Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NI380_RS03145 Genome accession   NZ_CP099934
Coordinates   645514..646032 (+) Length   172 a.a.
NCBI ID   WP_308386332.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 640514..651032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS03135 (NI380_03130) gshA 643249..644817 (+) 1569 WP_308386331.1 glutamate--cysteine ligase -
  NI380_RS03140 (NI380_03135) - 644842..645447 (+) 606 WP_015297256.1 hypothetical protein -
  NI380_RS03145 (NI380_03140) luxS 645514..646032 (+) 519 WP_308386332.1 S-ribosylhomocysteine lyase Regulator
  NI380_RS03150 (NI380_03145) - 646094..647374 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  NI380_RS03155 (NI380_03150) - 647500..648294 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  NI380_RS03160 (NI380_03155) ffh 648507..649889 (+) 1383 WP_005462555.1 signal recognition particle protein -
  NI380_RS03165 (NI380_03160) rpsP 650099..650347 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI380_RS03170 (NI380_03165) rimM 650376..650924 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19061.79 Da        Isoelectric Point: 4.7134

>NTDB_id=702722 NI380_RS03145 WP_308386332.1 645514..646032(+) (luxS) [Vibrio parahaemolyticus strain BM26A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVVDAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=702722 NI380_RS03145 WP_308386332.1 645514..646032(+) (luxS) [Vibrio parahaemolyticus strain BM26A]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCTAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGTACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGTAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878