Detailed information NTG0702719

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI380_RS03015
• Genome accession: NZ_CP099934
• Coordinates: 622932..623921 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 617932..628921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI380_RS02980 (NI380_02975)	ftsB	617940..618221 (+)	282	WP_005455577.1	cell division protein FtsB	-
NI380_RS02985 (NI380_02980)	ispD	618223..618927 (+)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI380_RS02990 (NI380_02985)	ispF	618945..619421 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI380_RS02995 (NI380_02990)	truD	619468..620511 (+)	1044	WP_025552420.1	tRNA pseudouridine(13) synthase TruD	-
NI380_RS03000 (NI380_02995)	surE	620511..621287 (+)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
NI380_RS03005 (NI380_03000)	-	621287..621913 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI380_RS03010 (NI380_03005)	-	621928..622851 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI380_RS03015 (NI380_03010)	rpoS	622932..623921 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NI380_RS03020 (NI380_03015)	mutS	624001..626562 (-)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
NI380_RS03025 (NI380_03020)	pncC	626647..627129 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
NI380_RS03030 (NI380_03025)	recA	627329..628372 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=702719 NI380_RS03015 WP_005478537.1 622932..623921(+) (rpoS) [Vibrio parahaemolyticus strain BM26A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702719 NI380_RS03015 WP_005478537.1 622932..623921(+) (rpoS) [Vibrio parahaemolyticus strain BM26A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAC
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851