Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NI380_RS01600 Genome accession   NZ_CP099934
Coordinates   337442..337957 (+) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain BM26A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332442..342957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS01580 (NI380_01580) - 332575..335145 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  NI380_RS01585 (NI380_01585) pilM 335288..336304 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  NI380_RS01590 (NI380_01590) pilN 336288..336866 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  NI380_RS01595 (NI380_01595) pilO 336859..337452 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  NI380_RS01600 (NI380_01600) pilP 337442..337957 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  NI380_RS01605 (NI380_01605) pilQ 337989..339737 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  NI380_RS01610 (NI380_01610) aroK 339926..340444 (+) 519 WP_005381319.1 shikimate kinase AroK -
  NI380_RS01615 (NI380_01615) aroB 340476..341576 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=702712 NI380_RS01600 WP_005454781.1 337442..337957(+) (pilP) [Vibrio parahaemolyticus strain BM26A]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=702712 NI380_RS01600 WP_005454781.1 337442..337957(+) (pilP) [Vibrio parahaemolyticus strain BM26A]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585