Detailed information NTG0702695

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI384_RS13615
• Genome accession: NZ_CP099928
• Coordinates: 2947509..2948516 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain BM24B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2942509..2953516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI384_RS13595 (NI384_13690)	rplC	2943043..2943672 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
NI384_RS13600 (NI384_13695)	rpsJ	2943687..2943998 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
NI384_RS13605 (NI384_13700)	rpmE	2944456..2944677 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
NI384_RS13610 (NI384_13705)	priA	2944972..2947176 (+)	2205	WP_308385304.1	primosomal protein N'	-
NI384_RS13615 (NI384_13710)	cytR	2947509..2948516 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
NI384_RS13620 (NI384_13715)	ftsN	2948692..2949237 (+)	546	WP_005481405.1	cell division protein FtsN	-
NI384_RS13625 (NI384_13720)	hslV	2949401..2949952 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
NI384_RS13630 (NI384_13725)	hslU	2949976..2951307 (+)	1332	WP_005457198.1	HslU--HslV peptidase ATPase subunit	-
NI384_RS13635 (NI384_13730)	-	2951492..2952409 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NI384_RS13640 (NI384_13735)	rraA	2952486..2952998 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
NI384_RS13645 (NI384_13740)	zapB	2953103..2953345 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=702695 NI384_RS13615 WP_005481416.1 2947509..2948516(+) (cytR) [Vibrio parahaemolyticus strain BM24B]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=702695 NI384_RS13615 WP_005481416.1 2947509..2948516(+) (cytR) [Vibrio parahaemolyticus strain BM24B]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904