Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI384_RS08480 Genome accession   NZ_CP099928
Coordinates   1820257..1821678 (+) Length   473 a.a.
NCBI ID   WP_140090266.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815257..1826678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS08460 (NI384_08550) - 1815317..1816030 (-) 714 WP_372587872.1 adenosylcobinamide-GDP ribazoletransferase -
  NI384_RS08465 (NI384_08555) cobT 1816113..1817156 (-) 1044 WP_308385139.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NI384_RS08470 (NI384_08560) - 1817840..1818535 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  NI384_RS08475 (NI384_08565) - 1818728..1820101 (+) 1374 WP_024701129.1 L-cystine transporter -
  NI384_RS08480 (NI384_08570) sbcB 1820257..1821678 (+) 1422 WP_140090266.1 exodeoxyribonuclease I Machinery gene
  NI384_RS08485 (NI384_08575) - 1821734..1822108 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  NI384_RS08490 (NI384_08580) - 1822110..1822787 (+) 678 WP_005454891.1 LrgB family protein -
  NI384_RS08495 (NI384_08585) cdd 1823152..1824039 (+) 888 WP_020840481.1 cytidine deaminase -
  NI384_RS08500 (NI384_08590) purT 1824187..1825362 (+) 1176 WP_029823377.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NI384_RS08505 (NI384_08595) - 1825464..1826114 (-) 651 WP_308385140.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54616.98 Da        Isoelectric Point: 4.9813

>NTDB_id=702685 NI384_RS08480 WP_140090266.1 1820257..1821678(+) (sbcB) [Vibrio parahaemolyticus strain BM24B]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNSLAVLDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=702685 NI384_RS08480 WP_140090266.1 1820257..1821678(+) (sbcB) [Vibrio parahaemolyticus strain BM24B]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGCTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAATAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAGTCTTGCTGTCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797