Detailed information NTG0702682

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NI384_RS03110
• Genome accession: NZ_CP099928
• Coordinates: 646697..650083 (-)
• Length: 1128 a.a.
• NCBI ID: WP_005461251.1
• Uniprot ID: Q87LY0
• Organism: Vibrio parahaemolyticus strain BM24B
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 641697..655083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI384_RS03095 (NI384_03095)	-	641922..642947 (-)	1026	WP_005461261.1	ABC transporter permease	-
NI384_RS03100 (NI384_03100)	-	642950..643936 (-)	987	WP_031855533.1	ABC transporter permease	-
NI384_RS03105 (NI384_03105)	-	644107..645789 (-)	1683	WP_308385413.1	ABC transporter substrate-binding protein	-
NI384_RS03110 (NI384_03110)	chiS	646697..650083 (-)	3387	WP_005461251.1	response regulator	Regulator
NI384_RS03115 (NI384_03115)	rsmC	650310..651335 (-)	1026	WP_053300162.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NI384_RS03120 (NI384_03120)	-	651422..652507 (-)	1086	WP_005461253.1	AI-2E family transporter	-
NI384_RS03125 (NI384_03125)	hemL	652845..654140 (-)	1296	WP_005479079.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NI384_RS03130 (NI384_03130)	erpA	654388..654729 (+)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127348.05 Da
• Isoelectric Point: 5.4383

>NTDB_id=702682 NI384_RS03110 WP_005461251.1 646697..650083(-) (chiS) [Vibrio parahaemolyticus strain BM24B]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=702682 NI384_RS03110 WP_005461251.1 646697..650083(-) (chiS) [Vibrio parahaemolyticus strain BM24B]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGACTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAAAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCGTATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTAACCTATTCCATTAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTATAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTAGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATTAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAAAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATACAAAAAT
CGGCAGTAAGCTTAGCTAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCCGCCGACCTGAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAACAAGTGCTGTATAATTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTCGACGATCACGTCCGCGTGCAAGTGG
TCGATACTGGTCAGGGAATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGTCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGTCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCCTTGGCCAGCGAAGAAGAAATCCAAGCAACTCAAACTT
TAGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCAGAACTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAGTTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCAGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTGGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCTAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCGTCAGCTGACGAACTGATCGCACCAAAATATTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATTGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCT
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGGGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTCGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGAGAGTTTACTCGTT
TGGCTGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTAGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: Q87LY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.77