Detailed information NTG0702674

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI384_RS02705
• Genome accession: NZ_CP099928
• Coordinates: 556668..557657 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain BM24B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 551668..562657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI384_RS02670 (NI384_02670)	ftsB	551676..551957 (+)	282	WP_005455577.1	cell division protein FtsB	-
NI384_RS02675 (NI384_02675)	ispD	551959..552663 (+)	705	WP_024702351.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI384_RS02680 (NI384_02680)	ispF	552681..553157 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI384_RS02685 (NI384_02685)	truD	553204..554247 (+)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
NI384_RS02690 (NI384_02690)	surE	554247..555023 (+)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
NI384_RS02695 (NI384_02695)	-	555023..555649 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI384_RS02700 (NI384_02700)	-	555664..556587 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI384_RS02705 (NI384_02705)	rpoS	556668..557657 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NI384_RS02710 (NI384_02710)	mutS	557737..560298 (-)	2562	WP_062866927.1	DNA mismatch repair protein MutS	-
NI384_RS02715 (NI384_02715)	pncC	560383..560865 (+)	483	WP_308385407.1	nicotinamide-nucleotide amidase	-
NI384_RS02720 (NI384_02720)	recA	561066..562109 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=702674 NI384_RS02705 WP_005478537.1 556668..557657(+) (rpoS) [Vibrio parahaemolyticus strain BM24B]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702674 NI384_RS02705 WP_005478537.1 556668..557657(+) (rpoS) [Vibrio parahaemolyticus strain BM24B]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAACGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851