Detailed information NTG0070266

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: V060002_RS01370
• Genome accession: NZ_AP018677
• Coordinates: 272970..273977 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain V060002
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 267970..278977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V060002_RS01350 (V060002_00252)	metJ	267974..268291 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
V060002_RS01355 (V060002_00253)	-	268402..269679 (-)	1278	WP_119275367.1	malic enzyme-like NAD(P)-binding protein	-
V060002_RS01360 (V060002_00254)	rpmE	269987..270205 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
V060002_RS01365 (V060002_00255)	priA	270460..272664 (+)	2205	WP_001247858.1	primosomal protein N'	-
V060002_RS01370 (V060002_00256)	cytR	272970..273977 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
V060002_RS01375 (V060002_00257)	-	274149..274700 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
V060002_RS01380 (V060002_00258)	hslV	274837..275394 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
V060002_RS01385 (V060002_00259)	hslU	275460..276791 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
V060002_RS01390 (V060002_00260)	-	276895..277812 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
V060002_RS01395 (V060002_00261)	rraA	277887..278402 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=70266 V060002_RS01370 WP_000224452.1 272970..273977(+) (cytR) [Vibrio cholerae strain V060002]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=70266 V060002_RS01370 WP_000224452.1 272970..273977(+) (cytR) [Vibrio cholerae strain V060002]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904