Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP18_RS23800 Genome accession   NZ_CP115295
Coordinates   5122867..5123196 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain 199     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5117867..5128196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP18_RS23785 (PCP18_23790) uvrB 5119254..5121266 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP18_RS23790 (PCP18_23795) - 5121454..5122650 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP18_RS23800 (PCP18_23805) comEA/comE1 5122867..5123196 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  PCP18_RS23805 (PCP18_23810) - 5123387..5125384 (-) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  PCP18_RS23810 (PCP18_23815) - 5125515..5126540 (-) 1026 WP_004350972.1 MraY family glycosyltransferase -
  PCP18_RS23815 (PCP18_23820) - 5126537..5127496 (-) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=702653 PCP18_RS23800 WP_003104586.1 5122867..5123196(-) (comEA/comE1) [Pseudomonas aeruginosa strain 199]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=702653 PCP18_RS23800 WP_003104586.1 5122867..5123196(-) (comEA/comE1) [Pseudomonas aeruginosa strain 199]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385