Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NI386_RS10980 Genome accession   NZ_CP099924
Coordinates   591918..592436 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain Isc7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 586918..597436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS10970 (NI386_10945) gshA 589653..591221 (+) 1569 WP_102600358.1 glutamate--cysteine ligase -
  NI386_RS10975 (NI386_10950) - 591246..591851 (+) 606 WP_015297256.1 hypothetical protein -
  NI386_RS10980 (NI386_10955) luxS 591918..592436 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  NI386_RS10985 (NI386_10960) - 592498..593778 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  NI386_RS10990 (NI386_10965) - 593904..594698 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  NI386_RS10995 (NI386_10970) ffh 594911..596293 (+) 1383 WP_005462555.1 signal recognition particle protein -
  NI386_RS11000 (NI386_10975) rpsP 596503..596751 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI386_RS11005 (NI386_10980) rimM 596780..597328 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=702639 NI386_RS10980 WP_005462534.1 591918..592436(+) (luxS) [Vibrio parahaemolyticus strain Isc7]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=702639 NI386_RS10980 WP_005462534.1 591918..592436(+) (luxS) [Vibrio parahaemolyticus strain Isc7]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884