Detailed information NTG0702636

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI386_RS10850
• Genome accession: NZ_CP099924
• Coordinates: 569334..570323 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain Isc7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 564334..575323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI386_RS10815 (NI386_10790)	ftsB	564342..564623 (+)	282	WP_005455577.1	cell division protein FtsB	-
NI386_RS10820 (NI386_10795)	ispD	564625..565329 (+)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI386_RS10825 (NI386_10800)	ispF	565347..565823 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI386_RS10830 (NI386_10805)	truD	565870..566913 (+)	1044	WP_191686266.1	tRNA pseudouridine(13) synthase TruD	-
NI386_RS10835 (NI386_10810)	surE	566913..567689 (+)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
NI386_RS10840 (NI386_10815)	-	567689..568315 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI386_RS10845 (NI386_10820)	-	568330..569253 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI386_RS10850 (NI386_10825)	rpoS	569334..570323 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NI386_RS10855 (NI386_10830)	mutS	570402..572963 (-)	2562	WP_308390581.1	DNA mismatch repair protein MutS	-
NI386_RS10860 (NI386_10835)	pncC	573048..573530 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
NI386_RS10865 (NI386_10840)	recA	573731..574774 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=702636 NI386_RS10850 WP_005478537.1 569334..570323(+) (rpoS) [Vibrio parahaemolyticus strain Isc7]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702636 NI386_RS10850 WP_005478537.1 569334..570323(+) (rpoS) [Vibrio parahaemolyticus strain Isc7]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851