Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NI386_RS01390 Genome accession   NZ_CP099923
Coordinates   326257..327354 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain Isc7     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 321257..332354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS01375 (NI386_01370) - 321921..322976 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  NI386_RS01380 (NI386_01375) - 323014..323469 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  NI386_RS01385 (NI386_01380) luxQ 323681..326257 (-) 2577 WP_308390909.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  NI386_RS01390 (NI386_01385) luxP 326257..327354 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  NI386_RS01395 (NI386_01390) - 327706..328026 (-) 321 WP_308390908.1 GIY-YIG nuclease family protein -
  NI386_RS01400 (NI386_01395) - 328023..328673 (-) 651 WP_308390907.1 YceH family protein -
  NI386_RS01405 (NI386_01400) - 328850..329065 (-) 216 WP_005477197.1 hypothetical protein -
  NI386_RS01410 (NI386_01405) - 329392..329706 (+) 315 WP_005453573.1 DUF496 family protein -
  NI386_RS01415 (NI386_01410) - 329829..331166 (+) 1338 WP_308391223.1 MATE family efflux transporter -
  NI386_RS01420 (NI386_01415) - 331240..332217 (-) 978 WP_015313433.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=702621 NI386_RS01390 WP_005463467.1 326257..327354(-) (luxP) [Vibrio parahaemolyticus strain Isc7]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=702621 NI386_RS01390 WP_005463467.1 326257..327354(-) (luxP) [Vibrio parahaemolyticus strain Isc7]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGTGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTCGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACTAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644