Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NI386_RS00425 Genome accession   NZ_CP099923
Coordinates   88535..89716 (+) Length   393 a.a.
NCBI ID   WP_069492146.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 83535..94716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS00410 (NI386_00415) - 83813..86029 (+) 2217 WP_308391226.1 collagenase -
  NI386_RS00415 (NI386_00420) - 86209..86946 (+) 738 WP_031419625.1 EAL domain-containing protein -
  NI386_RS00420 (NI386_00425) ylqF 87236..88180 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  NI386_RS00425 (NI386_00430) cqsA 88535..89716 (+) 1182 WP_069492146.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NI386_RS00430 (NI386_00435) cqsS 89794..91842 (-) 2049 WP_025540552.1 response regulator Regulator
  NI386_RS00435 (NI386_00440) - 92162..92779 (+) 618 WP_140342056.1 HAD family phosphatase -
  NI386_RS00440 (NI386_00445) - 92866..93414 (-) 549 WP_005486527.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43843.14 Da        Isoelectric Point: 6.3846

>NTDB_id=702619 NI386_RS00425 WP_069492146.1 88535..89716(+) (cqsA) [Vibrio parahaemolyticus strain Isc7]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFIGMESCLLSQSGWAANIGLLQTICASNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMD
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDIFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=702619 NI386_RS00425 WP_069492146.1 88535..89716(+) (cqsA) [Vibrio parahaemolyticus strain Isc7]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTATCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGTCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGGAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACATTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575