Detailed information NTG0702609

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI387_RS14600
• Genome accession: NZ_CP099921
• Coordinates: 3130367..3131374 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain BM25
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3125367..3136374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI387_RS14580 (NI387_14890)	rplC	3125901..3126530 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
NI387_RS14585 (NI387_14895)	rpsJ	3126545..3126856 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
NI387_RS14590 (NI387_14900)	rpmE	3127314..3127535 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
NI387_RS14595 (NI387_14905)	priA	3127830..3130034 (+)	2205	WP_308384698.1	primosomal protein N'	-
NI387_RS14600 (NI387_14910)	cytR	3130367..3131374 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
NI387_RS14605 (NI387_14915)	ftsN	3131551..3132096 (+)	546	WP_005481405.1	cell division protein FtsN	-
NI387_RS14610 (NI387_14920)	hslV	3132260..3132811 (+)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
NI387_RS14615 (NI387_14925)	hslU	3132835..3134166 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
NI387_RS14620 (NI387_14930)	-	3134591..3134815 (-)	225	WP_005489715.1	hypothetical protein	-
NI387_RS14625 (NI387_14935)	-	3134975..3135124 (-)	150	WP_308384699.1	AlpA family phage regulatory protein	-
NI387_RS14630 (NI387_14940)	radC	3135295..3135768 (+)	474	WP_005489555.1	DNA repair protein RadC	-
NI387_RS14635 (NI387_14945)	-	3135765..3136196 (+)	432	WP_308384700.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=702609 NI387_RS14600 WP_005481416.1 3130367..3131374(+) (cytR) [Vibrio parahaemolyticus strain BM25]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=702609 NI387_RS14600 WP_005481416.1 3130367..3131374(+) (cytR) [Vibrio parahaemolyticus strain BM25]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCGCAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCACAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904