Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI387_RS09575 Genome accession   NZ_CP099921
Coordinates   2034692..2036113 (+) Length   473 a.a.
NCBI ID   WP_042771075.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029692..2041113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS09555 (NI387_09865) - 2029751..2030503 (-) 753 WP_053321193.1 adenosylcobinamide-GDP ribazoletransferase -
  NI387_RS09560 (NI387_09870) cobT 2030548..2031591 (-) 1044 WP_140283757.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NI387_RS09565 (NI387_09875) - 2032275..2032970 (+) 696 WP_025441998.1 NAD(P)H-binding protein -
  NI387_RS09570 (NI387_09880) - 2033163..2034536 (+) 1374 WP_140283759.1 L-cystine transporter -
  NI387_RS09575 (NI387_09885) sbcB 2034692..2036113 (+) 1422 WP_042771075.1 exodeoxyribonuclease I Machinery gene
  NI387_RS09580 (NI387_09890) - 2036169..2036543 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  NI387_RS09585 (NI387_09895) - 2036545..2037222 (+) 678 WP_025522457.1 LrgB family protein -
  NI387_RS09590 (NI387_09900) cdd 2037587..2038474 (+) 888 WP_021453310.1 cytidine deaminase -
  NI387_RS09595 (NI387_09905) purT 2038622..2039797 (+) 1176 WP_005480612.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NI387_RS09600 (NI387_09910) - 2039899..2040549 (-) 651 WP_005480776.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54669.04 Da        Isoelectric Point: 5.1101

>NTDB_id=702599 NI387_RS09575 WP_042771075.1 2034692..2036113(+) (sbcB) [Vibrio parahaemolyticus strain BM25]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPVIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=702599 NI387_RS09575 WP_042771075.1 2034692..2036113(+) (sbcB) [Vibrio parahaemolyticus strain BM25]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAGCCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGTTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCTTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAACGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGTGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799