Detailed information NTG0702596

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NI387_RS03325
• Genome accession: NZ_CP099921
• Coordinates: 702100..705486 (-)
• Length: 1128 a.a.
• NCBI ID: WP_308384769.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM25
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 697100..710486

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI387_RS03310 (NI387_03315)	-	697324..698349 (-)	1026	WP_053300163.1	ABC transporter permease	-
NI387_RS03315 (NI387_03320)	-	698352..699338 (-)	987	WP_031855533.1	ABC transporter permease	-
NI387_RS03320 (NI387_03325)	-	699509..701191 (-)	1683	WP_062866940.1	ABC transporter substrate-binding protein	-
NI387_RS03325 (NI387_03330)	chiS	702100..705486 (-)	3387	WP_308384769.1	response regulator	Regulator
NI387_RS03330 (NI387_03335)	rsmC	705713..706737 (-)	1025	Protein_575	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NI387_RS03335 (NI387_03340)	-	706824..707909 (-)	1086	WP_005461253.1	AI-2E family transporter	-
NI387_RS03340 (NI387_03345)	hemL	708246..709541 (-)	1296	WP_005479079.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NI387_RS03345 (NI387_03350)	erpA	709789..710130 (+)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127321.97 Da
• Isoelectric Point: 5.4374

>NTDB_id=702596 NI387_RS03325 WP_308384769.1 702100..705486(-) (chiS) [Vibrio parahaemolyticus strain BM25]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLTAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNDELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=702596 NI387_RS03325 WP_308384769.1 702100..705486(-) (chiS) [Vibrio parahaemolyticus strain BM25]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGCCTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAGAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCGTATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTGACCTATTCCATCAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTACAAAGACTCGGCATTAGGAAAAACCTTCAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGCTAACCGCGATCATTCTTGTGGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACAACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATCAAACAGCAAAACGATGAACTTGAAAGCAACATCAAGCTGATTCAGAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAGTTGCGTACACCGCTACATGGCATGGTTGGG
ATTGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATCCAAAAAT
CGGCAGTAAGCTTAGCCAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTGAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAGCAAGTGCTGTATAACTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTTGACGATCACGTCCGAGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGCCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCGCTTTACGTAAG
CAGTCAACCGATGGTCGGCACCACGTTTAGTTTCACCTTGCCATTGGCCAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCGGAACTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAATTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTGGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCATCAGCTGACGAACTGATCGCACCAAAATATTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATCGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCT
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGCGAGTTTACTCGTT
TGGCAGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTGGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.971	100	0.77