Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NI387_RS03050 Genome accession   NZ_CP099921
Coordinates   634600..635118 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain BM25     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 629600..640118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS03040 (NI387_03045) gshA 632335..633903 (+) 1569 WP_062866931.1 glutamate--cysteine ligase -
  NI387_RS03045 (NI387_03050) - 633928..634533 (+) 606 WP_015297256.1 hypothetical protein -
  NI387_RS03050 (NI387_03055) luxS 634600..635118 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  NI387_RS03055 (NI387_03060) - 635180..636460 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  NI387_RS03060 (NI387_03065) - 636586..637380 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  NI387_RS03065 (NI387_03070) ffh 637593..638975 (+) 1383 WP_062866932.1 signal recognition particle protein -
  NI387_RS03070 (NI387_03075) rpsP 639185..639433 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI387_RS03075 (NI387_03080) rimM 639462..640011 (+) 550 Protein_524 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=702592 NI387_RS03050 WP_005462534.1 634600..635118(+) (luxS) [Vibrio parahaemolyticus strain BM25]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=702592 NI387_RS03050 WP_005462534.1 634600..635118(+) (luxS) [Vibrio parahaemolyticus strain BM25]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884