Detailed information NTG0702589

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI387_RS02705
• Genome accession: NZ_CP099921
• Coordinates: 557760..558749 (+)
• Length: 329 a.a.
• NCBI ID: WP_031813667.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 552760..563749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI387_RS02670 (NI387_02670)	ftsB	552768..553049 (+)	282	WP_005455577.1	cell division protein FtsB	-
NI387_RS02675 (NI387_02675)	ispD	553051..553755 (+)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI387_RS02680 (NI387_02680)	ispF	553773..554249 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI387_RS02685 (NI387_02685)	truD	554296..555339 (+)	1044	WP_020841270.1	tRNA pseudouridine(13) synthase TruD	-
NI387_RS02690 (NI387_02690)	surE	555339..556115 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
NI387_RS02695 (NI387_02695)	-	556115..556741 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI387_RS02700 (NI387_02700)	-	556756..557679 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI387_RS02705 (NI387_02705)	rpoS	557760..558749 (+)	990	WP_031813667.1	RNA polymerase sigma factor RpoS	Regulator
NI387_RS02710 (NI387_02710)	mutS	558828..561413 (-)	2586	WP_308384750.1	DNA mismatch repair protein MutS	-
NI387_RS02715 (NI387_02715)	-	561586..562932 (+)	1347	WP_140062029.1	site-specific integrase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6066

>NTDB_id=702589 NI387_RS02705 WP_031813667.1 557760..558749(+) (rpoS) [Vibrio parahaemolyticus strain BM25]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702589 NI387_RS02705 WP_031813667.1 557760..558749(+) (rpoS) [Vibrio parahaemolyticus strain BM25]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGATGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGATGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCACAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.848