Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NI387_RS01610 Genome accession   NZ_CP099921
Coordinates   338591..339106 (+) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain BM25     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333591..344106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS01590 (NI387_01590) - 333724..336294 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  NI387_RS01595 (NI387_01595) pilM 336437..337453 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  NI387_RS01600 (NI387_01600) pilN 337437..338015 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  NI387_RS01605 (NI387_01605) pilO 338008..338601 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  NI387_RS01610 (NI387_01610) pilP 338591..339106 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  NI387_RS01615 (NI387_01615) pilQ 339138..340886 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  NI387_RS01620 (NI387_01620) aroK 341075..341593 (+) 519 WP_005381319.1 shikimate kinase AroK -
  NI387_RS01625 (NI387_01625) aroB 341625..342725 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=702582 NI387_RS01610 WP_005454781.1 338591..339106(+) (pilP) [Vibrio parahaemolyticus strain BM25]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=702582 NI387_RS01610 WP_005454781.1 338591..339106(+) (pilP) [Vibrio parahaemolyticus strain BM25]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585