Detailed information NTG0702566

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NI388_RS14070
• Genome accession: NZ_CP099919
• Coordinates: 2993646..2994653 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain Isc14B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2988646..2999653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI388_RS14050 (NI388_14695)	rplC	2989180..2989809 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
NI388_RS14055 (NI388_14700)	rpsJ	2989824..2990135 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
NI388_RS14060 (NI388_14705)	rpmE	2990593..2990814 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
NI388_RS14065 (NI388_14710)	priA	2991109..2993313 (+)	2205	WP_308390417.1	primosomal protein N'	-
NI388_RS14070 (NI388_14715)	cytR	2993646..2994653 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
NI388_RS14075 (NI388_14720)	ftsN	2994830..2995375 (+)	546	WP_005481405.1	cell division protein FtsN	-
NI388_RS14080 (NI388_14725)	hslV	2995539..2996090 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
NI388_RS14085 (NI388_14730)	hslU	2996114..2997445 (+)	1332	WP_308390418.1	HslU--HslV peptidase ATPase subunit	-
NI388_RS14090 (NI388_14735)	-	2997630..2998547 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NI388_RS14095 (NI388_14740)	rraA	2998624..2999136 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
NI388_RS14100 (NI388_14745)	zapB	2999241..2999483 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=702566 NI388_RS14070 WP_005481416.1 2993646..2994653(+) (cytR) [Vibrio parahaemolyticus strain Isc14B]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=702566 NI388_RS14070 WP_005481416.1 2993646..2994653(+) (cytR) [Vibrio parahaemolyticus strain Isc14B]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904