Detailed information NTG0702547

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI388_RS02815
• Genome accession: NZ_CP099919
• Coordinates: 583479..584468 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain Isc14B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 578479..589468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI388_RS02780 (NI388_02780)	ftsB	578487..578768 (+)	282	WP_005455577.1	cell division protein FtsB	-
NI388_RS02785 (NI388_02785)	ispD	578770..579474 (+)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI388_RS02790 (NI388_02790)	ispF	579492..579968 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI388_RS02795 (NI388_02795)	truD	580015..581058 (+)	1044	WP_191686266.1	tRNA pseudouridine(13) synthase TruD	-
NI388_RS02800 (NI388_02800)	surE	581058..581834 (+)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
NI388_RS02805 (NI388_02805)	-	581834..582460 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI388_RS02810 (NI388_02810)	-	582475..583398 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI388_RS02815 (NI388_02815)	rpoS	583479..584468 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NI388_RS02820 (NI388_02820)	mutS	584547..587108 (-)	2562	WP_308390581.1	DNA mismatch repair protein MutS	-
NI388_RS02825 (NI388_02825)	pncC	587193..587675 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
NI388_RS02830 (NI388_02830)	recA	587876..588919 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=702547 NI388_RS02815 WP_005478537.1 583479..584468(+) (rpoS) [Vibrio parahaemolyticus strain Isc14B]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702547 NI388_RS02815 WP_005478537.1 583479..584468(+) (rpoS) [Vibrio parahaemolyticus strain Isc14B]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851