Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   NI390_RS18875 Genome accession   NZ_CP099916
Coordinates   919346..920443 (-) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 914346..925443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS18855 (NI390_18855) - 914885..915259 (+) 375 WP_020433707.1 YgiW/YdeI family stress tolerance OB fold protein -
  NI390_RS18860 (NI390_18860) - 915412..915936 (+) 525 WP_158146148.1 hypothetical protein -
  NI390_RS18865 (NI390_18865) - 916071..916751 (+) 681 WP_020433710.1 flagellar brake protein -
  NI390_RS18870 (NI390_18870) luxQ 916757..919324 (-) 2568 WP_308413494.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  NI390_RS18875 (NI390_18875) luxP 919346..920443 (-) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  NI390_RS18880 (NI390_18880) - 920654..921811 (-) 1158 WP_308413495.1 conjugal transfer protein TraF -
  NI390_RS18885 (NI390_18885) - 921925..922206 (-) 282 WP_020433718.1 GIY-YIG nuclease family protein -
  NI390_RS18890 (NI390_18890) - 922217..922852 (-) 636 WP_020433719.1 YceH family protein -
  NI390_RS18895 (NI390_18895) - 922897..923094 (-) 198 WP_020329288.1 hypothetical protein -
  NI390_RS18900 (NI390_18900) - 923284..923601 (+) 318 WP_020329287.1 DUF496 family protein -
  NI390_RS18905 (NI390_18905) - 924023..925234 (+) 1212 WP_308413496.1 DUF3644 domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=702510 NI390_RS18875 WP_024375537.1 919346..920443(-) (luxP) [Vibrio fluvialis strain Isc7A]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=702510 NI390_RS18875 WP_024375537.1 919346..920443(-) (luxP) [Vibrio fluvialis strain Isc7A]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTTGTCTATCCGGGTCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGTTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGATACCACCCGTCACCGCAAGTTTATCGAGCATGTTCTCAGTTCCTCGCCAACCAAATTGATTCTTCAGAATATC
ACTACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTACCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCTACT
CAGGAGAGTGGTTACGAAGCAACGCTTAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
CGTGGCACTGGGTGCTGCGCAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTGAACGGCTGGGGCGGTGGTTCGG
CAGAACTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGCATTGCAATGGCA
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAGAAAATCGATGTATTTAAGCAACGGGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707