Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NI390_RS06060 Genome accession   NZ_CP099915
Coordinates   1292022..1293446 (-) Length   474 a.a.
NCBI ID   WP_024374162.1    Uniprot ID   A0AAX2LNH1
Organism   Vibrio fluvialis strain Isc7A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287022..1298446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS06040 (NI390_06025) - 1287092..1289800 (+) 2709 WP_222763499.1 EAL domain-containing protein -
  NI390_RS06045 (NI390_06030) cdd 1289847..1290734 (-) 888 WP_020432570.1 cytidine deaminase -
  NI390_RS06050 (NI390_06035) - 1290936..1291616 (-) 681 WP_020327589.1 LrgB family protein -
  NI390_RS06055 (NI390_06040) - 1291607..1291981 (-) 375 WP_020327588.1 CidA/LrgA family protein -
  NI390_RS06060 (NI390_06045) sbcB 1292022..1293446 (-) 1425 WP_024374162.1 exodeoxyribonuclease I Machinery gene
  NI390_RS06065 (NI390_06050) - 1293684..1293896 (+) 213 WP_075989234.1 hypothetical protein -
  NI390_RS06070 (NI390_06055) - 1293978..1295357 (-) 1380 WP_020432565.1 L-cystine transporter -
  NI390_RS06075 (NI390_06060) - 1295558..1296241 (-) 684 WP_020432563.1 NAD(P)H-binding protein -
  NI390_RS06080 (NI390_06065) - 1296626..1297237 (+) 612 WP_222725438.1 flavin reductase family protein -
  NI390_RS06085 (NI390_06070) cobT 1297251..1298279 (+) 1029 WP_020327523.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54430.86 Da        Isoelectric Point: 5.1517

>NTDB_id=702488 NI390_RS06060 WP_024374162.1 1292022..1293446(-) (sbcB) [Vibrio fluvialis strain Isc7A]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=702488 NI390_RS06060 WP_024374162.1 1292022..1293446(-) (sbcB) [Vibrio fluvialis strain Isc7A]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCAGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGACGTGATTGC
AACCATTGAACTGGCGAAGAAAGTCAAAGCAGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAATTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.51

99.789

0.833