Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NI390_RS02420 Genome accession   NZ_CP099915
Coordinates   489093..489611 (+) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain Isc7A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 484093..494611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS02410 (NI390_02410) gshA 486898..488463 (+) 1566 WP_047456939.1 glutamate--cysteine ligase -
  NI390_RS02415 (NI390_02415) - 488465..489067 (+) 603 WP_158124314.1 hypothetical protein -
  NI390_RS02420 (NI390_02420) luxS 489093..489611 (+) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  NI390_RS02425 (NI390_02425) - 489680..490954 (-) 1275 WP_020330450.1 HlyC/CorC family transporter -
  NI390_RS02430 (NI390_02430) - 491044..491838 (-) 795 WP_020330452.1 inner membrane protein YpjD -
  NI390_RS02435 (NI390_02435) ffh 492051..493433 (+) 1383 WP_020330453.1 signal recognition particle protein -
  NI390_RS02440 (NI390_02440) rpsP 493659..493907 (+) 249 WP_020330454.1 30S ribosomal protein S16 -
  NI390_RS02445 (NI390_02445) rimM 493935..494489 (+) 555 WP_020330455.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=702477 NI390_RS02420 WP_020330449.1 489093..489611(+) (luxS) [Vibrio fluvialis strain Isc7A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=702477 NI390_RS02420 WP_020330449.1 489093..489611(+) (luxS) [Vibrio fluvialis strain Isc7A]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
AATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913