Detailed information NTG0702474

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI390_RS02300
• Genome accession: NZ_CP099915
• Coordinates: 467191..468177 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain Isc7A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 462191..473177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI390_RS02265 (NI390_02265)	ftsB	462260..462541 (+)	282	WP_020330423.1	cell division protein FtsB	-
NI390_RS02270 (NI390_02270)	ispD	462538..463248 (+)	711	WP_020429679.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI390_RS02275 (NI390_02275)	ispF	463251..463727 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI390_RS02280 (NI390_02280)	truD	463759..464805 (+)	1047	WP_024374198.1	tRNA pseudouridine(13) synthase TruD	-
NI390_RS02285 (NI390_02285)	surE	464798..465565 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
NI390_RS02290 (NI390_02290)	-	465558..466184 (+)	627	WP_047459356.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI390_RS02295 (NI390_02295)	nlpD	466184..467119 (+)	936	WP_024374199.1	murein hydrolase activator NlpD	-
NI390_RS02300 (NI390_02300)	rpoS	467191..468177 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
NI390_RS02305 (NI390_02305)	mutS	468246..470807 (-)	2562	WP_172557967.1	DNA mismatch repair protein MutS	-
NI390_RS02310 (NI390_02310)	pncC	470892..471380 (+)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
NI390_RS02315 (NI390_02315)	recA	471553..472605 (+)	1053	WP_020330433.1	recombinase RecA	Machinery gene
NI390_RS02320 (NI390_02320)	recX	472675..473133 (+)	459	WP_047459347.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=702474 NI390_RS02300 WP_020429689.1 467191..468177(+) (rpoS) [Vibrio fluvialis strain Isc7A]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=702474 NI390_RS02300 WP_020429689.1 467191..468177(+) (rpoS) [Vibrio fluvialis strain Isc7A]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAATAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTATTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGTTAAATATTTACCTGCGTACTGCACGTGAGCTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGACGTCTGAGAGAGATCCTGATGAAACAGGGCCTGAACATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887