Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIY84_RS13595 Genome accession   NZ_CP099914
Coordinates   2814265..2814894 (-) Length   209 a.a.
NCBI ID   WP_256879330.1    Uniprot ID   -
Organism   Escherichia albertii strain 104_2_TS_A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2809265..2819894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY84_RS13580 (NIY84_13580) helD 2809507..2811561 (-) 2055 WP_256879338.1 DNA helicase IV -
  NIY84_RS13585 (NIY84_13585) - 2811684..2812130 (+) 447 WP_001261228.1 YccF domain-containing protein -
  NIY84_RS13590 (NIY84_13590) yccS 2812140..2814305 (+) 2166 WP_072248637.1 YccS family putative transporter -
  NIY84_RS13595 (NIY84_13595) sxy/tfoX 2814265..2814894 (-) 630 WP_256879330.1 TfoX/Sxy family DNA transformation protein Regulator
  NIY84_RS13600 (NIY84_13600) sulA 2815112..2815621 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIY84_RS13605 (NIY84_13605) ompA 2815977..2817029 (+) 1053 WP_024164823.1 porin OmpA -
  NIY84_RS13610 (NIY84_13610) matP 2817104..2817556 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIY84_RS13615 (NIY84_13615) - 2817742..2819502 (+) 1761 WP_000156442.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24333.24 Da        Isoelectric Point: 9.0097

>NTDB_id=702456 NIY84_RS13595 WP_256879330.1 2814265..2814894(-) (sxy/tfoX) [Escherichia albertii strain 104_2_TS_A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKYPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLESILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702456 NIY84_RS13595 WP_256879330.1 2814265..2814894(-) (sxy/tfoX) [Escherichia albertii strain 104_2_TS_A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAATATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGTCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAGATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895