Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIY85_RS14435 Genome accession   NZ_CP099912
Coordinates   2911522..2912151 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 105_1_LWG_A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906522..2917151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY85_RS14420 (NIY85_14415) helD 2906764..2908818 (-) 2055 WP_025237257.1 DNA helicase IV -
  NIY85_RS14425 (NIY85_14420) - 2908941..2909387 (+) 447 WP_001261228.1 YccF domain-containing protein -
  NIY85_RS14430 (NIY85_14425) yccS 2909397..2911562 (+) 2166 WP_137648957.1 YccS family putative transporter -
  NIY85_RS14435 (NIY85_14430) sxy/tfoX 2911522..2912151 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  NIY85_RS14440 (NIY85_14435) sulA 2912369..2912878 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIY85_RS14445 (NIY85_14440) ompA 2913234..2914286 (+) 1053 WP_024164823.1 porin OmpA -
  NIY85_RS14450 (NIY85_14445) matP 2914360..2914812 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIY85_RS14455 (NIY85_14450) - 2914998..2916758 (+) 1761 WP_025237259.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=702434 NIY85_RS14435 WP_000839162.1 2911522..2912151(-) (sxy/tfoX) [Escherichia albertii strain 105_1_LWG_A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702434 NIY85_RS14435 WP_000839162.1 2911522..2912151(-) (sxy/tfoX) [Escherichia albertii strain 105_1_LWG_A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904