Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIY89_RS15050 Genome accession   NZ_CP099907
Coordinates   3031283..3031912 (-) Length   209 a.a.
NCBI ID   WP_059225154.1    Uniprot ID   -
Organism   Escherichia albertii strain 112_1_EW_A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026283..3036912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY89_RS15035 (NIY89_15010) helD 3026525..3028579 (-) 2055 WP_233991590.1 DNA helicase IV -
  NIY89_RS15040 (NIY89_15015) - 3028702..3029148 (+) 447 WP_001261228.1 YccF domain-containing protein -
  NIY89_RS15045 (NIY89_15020) yccS 3029158..3031323 (+) 2166 WP_072251200.1 YccS family putative transporter -
  NIY89_RS15050 (NIY89_15025) sxy/tfoX 3031283..3031912 (-) 630 WP_059225154.1 TfoX/Sxy family DNA transformation protein Regulator
  NIY89_RS15055 (NIY89_15030) sulA 3032130..3032639 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIY89_RS15060 (NIY89_15035) ompA 3032995..3034053 (+) 1059 WP_149476806.1 porin OmpA -
  NIY89_RS15065 (NIY89_15040) matP 3034128..3034580 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIY89_RS15070 (NIY89_15045) - 3034766..3036526 (+) 1761 WP_000156442.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24275.15 Da        Isoelectric Point: 9.1951

>NTDB_id=702390 NIY89_RS15050 WP_059225154.1 3031283..3031912(-) (sxy/tfoX) [Escherichia albertii strain 112_1_EW_A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYSVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702390 NIY89_RS15050 WP_059225154.1 3031283..3031912(-) (sxy/tfoX) [Escherichia albertii strain 112_1_EW_A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTCTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9