Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP28_RS07005 Genome accession   NZ_CP115293
Coordinates   1111411..1111767 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain 382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106411..1116767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP28_RS06980 (PCP28_06975) fabF 1106623..1107867 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PCP28_RS06985 (PCP28_06980) pabC 1107867..1108682 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  PCP28_RS06990 (PCP28_06985) mltG 1108688..1109737 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  PCP28_RS06995 (PCP28_06990) tmk 1109766..1110398 (+) 633 WP_003091125.1 dTMP kinase -
  PCP28_RS07000 (PCP28_06995) - 1110391..1111377 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PCP28_RS07005 (PCP28_07000) pilZ 1111411..1111767 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP28_RS07010 (PCP28_07005) - 1111782..1112558 (+) 777 WP_003091117.1 TatD family hydrolase -
  PCP28_RS07015 (PCP28_07010) - 1112784..1113917 (-) 1134 WP_023114517.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP28_RS07020 (PCP28_07015) - 1114003..1114641 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP28_RS07025 (PCP28_07020) - 1114791..1115687 (+) 897 WP_003091113.1 radical SAM protein -
  PCP28_RS07030 (PCP28_07025) - 1115752..1116384 (+) 633 WP_023114516.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=702362 PCP28_RS07005 WP_003091119.1 1111411..1111767(+) (pilZ) [Pseudomonas aeruginosa strain 382]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=702362 PCP28_RS07005 WP_003091119.1 1111411..1111767(+) (pilZ) [Pseudomonas aeruginosa strain 382]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAATGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449