Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIY90_RS01295 Genome accession   NZ_CP099906
Coordinates   256985..257614 (+) Length   209 a.a.
NCBI ID   WP_256879330.1    Uniprot ID   -
Organism   Escherichia albertii strain 121_1_EW_A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 251985..262614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY90_RS01275 (NIY90_01275) - 252377..254137 (-) 1761 WP_000156442.1 Lon protease family protein -
  NIY90_RS01280 (NIY90_01280) matP 254323..254775 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIY90_RS01285 (NIY90_01285) ompA 254850..255902 (-) 1053 WP_024164823.1 porin OmpA -
  NIY90_RS01290 (NIY90_01290) sulA 256258..256767 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIY90_RS01295 (NIY90_01295) sxy/tfoX 256985..257614 (+) 630 WP_256879330.1 TfoX/Sxy family DNA transformation protein Regulator
  NIY90_RS01300 (NIY90_01300) yccS 257574..259739 (-) 2166 WP_072248637.1 YccS family putative transporter -
  NIY90_RS01305 (NIY90_01305) - 259749..260195 (-) 447 WP_001261228.1 YccF domain-containing protein -
  NIY90_RS01310 (NIY90_01310) helD 260318..262372 (+) 2055 WP_256879338.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24333.24 Da        Isoelectric Point: 9.0097

>NTDB_id=702354 NIY90_RS01295 WP_256879330.1 256985..257614(+) (sxy/tfoX) [Escherichia albertii strain 121_1_EW_A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKYPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLESILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702354 NIY90_RS01295 WP_256879330.1 256985..257614(+) (sxy/tfoX) [Escherichia albertii strain 121_1_EW_A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAATATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGTCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAGATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895